CoverModule 1.0. Homeostasis, Membranes, Electrophysiology and ANS (Essay Questions)1.1. Homeostasis1.1.1. Homeostasis Defined1.1.2. Homeostatic Control Systems1.1.3. Feedback Response Loop1.2. Cell Transport; Water & Solutes1.2.1. Fluid Compartments1.2.2. Osmosis1.2.3. Diffusion of Solutes1.2.4. Active Transport1.2.5. Bulk Transport1.3. Electrophysiology1.3.1. Ions and Cell Membranes1.3.2. Membrane Potentials1.3.3. Graded Potential1.3.4. Action Potentials1.3.5. Refractory Periods1.3.6. Propagation of an Action Potential1.4. THE SYNAPSE1.5. THE AUTONOMIC NERVOUS SYSTEM1.5.1. Organization of the Nervous System1.5.2. Structural Organization of the ANS1.5.3. The SNS and the PNS1.5.4. The Enteric Nervous System1.5.5. Physiology of the ANS1.5.6. Neurotransmitters of the ANS1.5.7. Receptors of the ANS1.5.8. Actions of the Autonomic Nervous System1.5.9. Table of Actions for the SNS and PNS and Some Common DrugsModule 2.0. Skeletal Muscle and Special Senses2.1. Structural Organization of Skeletal Muscle2.2.1. Neuromuscular Junction, Excitation-Contraction Coupling2.2.2. Muscle Contractures and Cramps2.3. Whole Muscle Contraction, Fiber Type, Fatigue and Muscle Pharmacology2.3.1. Motor Units2.3.2. Factors that Influence the Force of Contraction2.3.3. Energy Source for Muscle Contraction2.3.4. Skeletal Muscle Fiber Types2.3.5. Fatigue2.3.6. Muscle Pharmacology2.4. Smooth Muscle2.4.1. Smooth Muscle Contraction2.5. Control of Body Movement2.5.1. Voluntary Control of Muscle2.5.2. Reflexes2.6. Taste and Smell2.6.1. Taste2.6.2. The Sense of Smell2.7. Vision2.7.1. Structure of the Eye2.7.2. Focusing Light on the Retina2.7.3. Converting Light to Action Potentials2.7.4. The Retina2.7.5. Phototransduction2.7.6. Receptive Fields2.8. Hearing and Equilibrium2.8.1. The Nature of Sound2.8.2. The Hearing Apparatus2.8.3. Sound Vibrations to Action Potentials2.8.4. The Sense of Balance and EquilibriumModule 3.0. Cardiovascular System3.1. Structure of the Heart3.1.1. Chambers and Circulation3.2. Cardiac Cell Action Potentials3.2.1. Action Potentials in Cardiac Muscle Cells3.2.2. Action Potentials in Cardiac Autorhythmic cells3.2.3. Cellular Mechanisms of Inotropy and Chronotropy3.3. Electrophysiology of Heart Muscle3.3.1. Heart Conduction System3.3.2. Electrocardiogram (ECG)3.3.3. Abnormal ECG - Current of Injury3.4. The Cardiac Cycle3.4.1. Cardiac cycle3.4.2. Cardiac Measurements and Pressure Volume Loops3.5. Blood vessels and Blood Pressure3.5.1. Arteries and Veins3.5.2. Capillaries3.5.3. Blood Pressure Regulation and Shock3.5.4. Capillary Exchange3.5.5. Myogenic and Paracrine Regulation of Vasoconstriction and Vasodilation3.6. Blood3.6.1. Composition of Blood3.6.2. Hematopoeisis3.6.3. Breaking Down Red Blood Cells3.6.4. HemostasisModule 4.0. Urinary and Respiratory Systems4.1. Function and Structure of the Kidney4.1.1. Urinary System Function4.1.2. Functional Anatomy of the Urinary System4.1.3. The Nephron: Functional Unit of the Kidney4.1.4. The Renal Corpuscle: Bowman's Capsule4.2. Physiology of Urine Production4.2.1. Filtration4.2.2. Renal Clearance4.2.3. Tubular Reabsorption4.2.4. Urine Concentration and Dilution4.2.5. Hormonal Regulation of Urine Production4.3. Acid/Base Balance4.3.1. Buffers4.3.2. Acid/Base Disturbances4.4. The Respiratory System4.4.1. Respiratory System Structure and Function4.4.2. Respiratory Membrane4.4.3. Respiratory pressures and Inspriation/Expiration4.4.4. Alveoli and Surfactant4.4.5. Pneumothorax4.5. Gas Exchange and Transport4.5.1. Gas Laws4.5.2. Partial Pressure Gradients in the Lung4.5.3. Alveolar Gas Equation4.5.4. Oxygen and Carbon Dioxide Transport in the Blood4.5.5. Alveolar Ventilation4.5.6. Ventilation/Perfusion Ratio4.6. Chronic Bronchitis and Emphysema4.6.1. Respiratory Control by the Medulla Oblongata4.6.2. Chemicals that Regulate VentilationModule 5.0. Digestive, Endocrine and Reproductive Systems5.1. Functional Anatomy of the Digestive System5.1.1. Layers of the Digestive Tract5.1.2. Enteric Nervous System5.1.3. Organs of the Digestive System5.2. Digestion5.2.1. Carbohydrates5.2.2. Proteins5.2.3. Lipids5.2.4. Lipoproteins5.3. Regulation of Digestive Secretions5.4. Endocrine System5.4.1. Overview of the Endocrine System5.4.2. Hormone Receptors5.4.3. Hormones of the Body5.4.4. Other Hormones: Melatonin and Pheromones5.5. The Hypothalamus and Pituitary Gland5.5.1. Structure and Function of the Hypothalamus and Pituitary Gland5.5.2. The Posterior Pituitary5.5.3. The Anterior Pituitary5.5.4. Growth Hormone5.5.5. Prolactin5.5.6. Thyroid Hormones5.5.7. Adrenal Hormones5.6. Pancreas5.6.1. Insulin and Glucagon5.6.2. Diabetes Mellitus5.7. Reproductive System Anatomy5.7.1. Female Reproductive Anatomy5.7.2. Male Reproductive Anatomy5.7.3. Sexual Development at Puberty5.7.4. Male Reproductive Endocrine Axis5.7.5. Spermatogenesis5.7.6. Female Reproductive System: Oogenesis5.7.7. Ovulation and Fertilization5.7.8. The Ovarian Cycle5.7.9. The Uterine Cycle5.7.10. PregnancyAppendix A. GenderAppendix B. The Placebo EffectB.2.1. The Placebo EffectB.2.2. Examples of the Placebo EffectB.2.3. How do Placebos Work?B.2.4. Are Placebos Ethical?B.2.5. How do we validate actual effectiveness of placebosB.2.6. Tips for evaluating scientific evidenceB.2.7. What about Faith Healings


Hemostasis, or the cessation of bleeding, is critical to the survival of the human organism. If the mechanisms of hemostasis were completely taken away, a mere paper cut could ultimately lead an individual to bleed to death. Luckily, the mechanisms of hemostasis function properly for most individuals. Hemostasis can be divided into three steps: vascular spasm, development of a platelet plug, and blood clot formation.

Vascular Spasm

Upon incurring some type of trauma, blood flow through damaged vessels is immediately limited through a process known as vascular spasm. During a vascular spasm, pain can cause reflexes in the nervous system to stimulate smooth muscle contraction around the blood vessel. As the smooth muscle of the impaired vessels contract, the diameter of the vessels decrease. In some instances, the blood vessel can be entirely occluded by a vascular spasm. However, this occlusion is short lived and the smooth muscle will eventually relax and then bleeding out of the damaged vessel can greatly increase. As effective as a vascular spasm is, it is temporary and cannot establish hemostasis alone.

Platelet Plug

Formation of Platelet Plug
Image drawn by BYU-Idaho student Nate Shoemaker Spring 2016

The image above shows a blood vessel in longitudinal section. Number one shows how platelets begin to converge, slow down and roll along the vessel wall near the damaged area. Platelets begin to attach to the collagen in the damaged area and this activates them. Activated platelets experience a physical shape change and are able to attract other platelets to attach to them and to any other exposed collagen. This is called a platelet plug. The image below shows a close up of the platelet plug and more detail involved in the chemical messengers that facilitate a successful platelet plug.

Platelet Activation
Image drawn by BYU-Idaho student Nate Shoemaker Spring 2016. Description below by T. Orton Winter 2017

When blood vessels suffer damage, a protein secreted by endothelial cells known as von Willebrand factor (vWf) binds to exposed collagen within the vessel wall. Circulating platelets in turn bind to the collagen bound molecules of von Willebrand factor and anchor themselves to the damaged area. This interaction also causes a platelet activation which increases the likelihood that more platelets will accumulate.

Following platelet adhesion, the anchored platelets begin to secrete a variety of chemical compounds from granules called "alpha" and "dense" granules. Alpha granules release additional von Willebrand factor and platelet derived growth factors (PDGF). vWF assists with further platelet adherence and activation. PDGF facilitates a variety of functions that assist in the long-term wound healing of tissue damage. Dense granules release adenosine diphosphate (ADP). ADP and thromboxane (also called TXA2 and released from the platelet cytoplasm) bind to surface receptors on additional circulating platelets and promote further activation. These newly activated platelets, in turn, activate additional platelets, establishing a chemical cascade.

Platelet activation also results in the expression of membrane receptors called fibrinogen receptors. These receptors bind a plasma protein known as fibrinogen. Like von Willebrand factor, fibrinogen serves as a type of linking molecule. However, whereas von Willebrand factor links collagen to platelets, fibrinogen links multiple platelets together. Generally, enough platelets link up that they span across and "plug" the opening in a damaged vessel. Platelets are rich in the proteins actin and myosin which allows for contraction which forms a more compact platelet plug. This is called Platelet Aggregation.

Platelet Plug Regulation

Unless you have a clotting disorder (like hemophilia), your blood will spontaneously form a clot in order to close an open wound.  But what is it about the wound that induces clot formation?  Equally important, how does your body prevent clot formation when there is no wound?  In order to understand hemostasis (the “stopping” of blood flow), it is important to first understand the chemical signals that block hemostasis under normal conditions (because spontaneous clot formation is very painful and can be lethal).  Spontaneous clot formation is primarily prevented by the active inhibition of platelets, and the most important cell type to regulate platelets is the endothelial cell.  

Healthy, intact endothelial cells block spontaneous platelet activation using three primary mechanisms.  However, all three mechanisms share a common goal:  reduce Ca2+  levels within the platelet.  Acting as a second messenger, increased Ca2+  within platelets will lead to the exocytosis of platelet granules.  Granule release is synonymous with platelet activation.  Thus, by reducing Ca2+ , platelets are maintained in an inactive state. The first approach used by endothelial cells to inhibit platelet activation is the production and secretion of nitric oxide (NO).  Secreted NO enters platelets where it activates the enzyme guanylate cyclase, which then stimulates the formation of cGMP (cyclic guanosine mono-phosphate).  cGMP then blocks the function of phospholipase C.  In the absence of NO, phospholipase C cleaves the membrane phospholipid PIP2, which leads to the production of inositol triphosphate (IP3).  IP3 then binds to and opens Ca2+  channels on the surface of the endoplasmic reticulum, causing Ca2+  to flood the cell.  And remember – intracellular Ca2+  causes exocytosis (granule release).  Thus, by blocking the release of Ca2+  from the ER, NO from intact endothelial cells inhibits platelet granule release. 

Another mechanism used by endothelial cells to inhibit platelet activation is the production and secretion of a signaling molecule called prostacyclin.  Prostacyclin is the ligand for a G-protein coupled receptor (GPCR) on the surface of the platelet.  Activation of this GPCR by prostacyclin leads to the production of cAMP.  cAMP then activates a Ca2+  pump on the surface of the platelet, which actively pumps Ca2+  out of the platelet.  Thus, increased Ca2+  efflux reduces Ca2+  within the platelets, which inhibits granule release.

Third, endothelial cells express an ADPase on the surface of the cell.  This ADPase is an enzyme that metabolizes ADP to AMP (adenosine mono-phosphate).  ADP is a potent platelet activator and works by binding to ADP receptors on the surface of the platelet.  Activation of this receptor (P2Y12) directly inhibits the effects of prostacyclin (described in the previous paragraph).  As such, P2Y12 activation causes Ca2+  to build up inside the cell, resulting in granule release.  The endothelial ADPase inhibits P2Y12 activation by eliminating its ligand, ADP. 

Interestingly, you have likely seen TV commercials for the drug Plavix (clopridogel bisulfate).  Plavix is often prescribed to patients following a heart attack or stroke to help prevent clot formation.  Plavix is a P2Y12 antagonist. As you can see, each strategy regulates the buildup of Ca2+  within platelets.  However, following injury, these inhibitory mechanisms are overcome, resulting in platelet granule release and the initiation of platelet plug formation. It is also interesting to note that one of the most potent stimulators to increase endothelial cell production of NO, ADPase and Prostacyclin is a protein called Thrombin.  As you continue to read about hemostasis, try to appreciate how thrombin becomes an integral part of a negative feedback loop that can help regulate the positive feedback initiated during clotting.

Clotting (Coagulation) Cascade

Simultaneously with the mechanisms of hemostasis listed above, a process known as coagulation occurs. Coagulation requires an array of proteins known as coagulation factors or clotting factors which constantly circulate within the plasma in an inactive state. These factors are typically represented by Roman numerals which indicate the order in which they were identified and offer no explanation as to their function. Upon encountering vessel damage, certain of these factors become activated and initiate complex chemical cascades which ultimately lead to the formation of a blood clot. This activation may occur through either an intrinsic pathway (within the bloodstream) or an extrinsic pathway (outside of the blood stream). Both pathways ultimately lead to a common pathway through which a blood clot forms.

The chart below shows the cascade of clotting factor activation. The pathway has two entry points to begin the cascade, the "intrinsic" and "extrinsic" pathways. The common pathway begins with the activation of clotting factor X, which is also called Stuart Factor".

Classical Blood Coagulation Pathway
File: Classical blood coagulation pathway.png; Author: Dr. Graham Beards; Site:; License: Creative Commons Attribution-Share Alike 3.0 Unported license.

Intrinsic Pathway

When blood vessels incur damage, collagen within the vessel walls is exposed to the circulating bloodstream. Contact with collagen reacts with factor XII which in turn activates factor XI which sequentially initiates factor IX. Factor IX recruits factor VIII, platelet phospholipids, and Ca2+ ion cofactors to form a complex that activates factor X, thereby initiating the common pathway.

Extrinsic Pathway

Unlike the intrinsic pathway which is activated by exposed collagen, the extrinsic pathway is activated by chemical signals released by damaged tissues external to the bloodstream. Damage to these tissues destroys cellular plasma membranes yielding a collection of phospholipids and an integral receptor protein known as tissue thromboplastin (alternatively known as factor III or tissue factor). As blood rushes into these damaged tissues, circulating molecules of factor VII associate with the released combination of factor III molecules and phospholipids to form an enzymatic complex. Ca2+serves as a required cofactor for the formation of this complex. This complicated enzymatic complex reacts with and activates factor X and the common pathway is again initiated. This factor III, VII, phospholipid and calcium complex are also capable of activating factor IX within the intrinsic pathway, indicating a one-way connection between the two pathways.

Common Pathway

Upon activation, factor X joins with factor V, Ca2+, and platelet surface phospholipids to form a prothrombin activating complex. This complex target prothrombin (factor II) and converts it to a molecule known as thrombin. Thrombin is an important enzyme which converts a protein known as fibrinogen into a fibrous clot forming protein known as fibrin.

Fibrin plays a critical role in the formation of a clot by forming a dense, fibrous weave against which blood "congeals" into a thicker, gel-like clot capable of clogging damaged areas of vessels.

The activation of thrombin initiates a positive feedback mechanism, as thrombin is capable of activating numerous factors within the coagulation pathways. Consequently, thrombin exerts a stimulatory effect on its own production. Furthermore, thrombin also activates factor XIII which stabilizes the clot by catalyzing the formation of covalent bonds between fibrin strands. Finally, thrombin initiates additional platelet activation. Thus, the thrombin positive feedback mechanism stimulates further platelet plug proliferation in addition to its coagulation effects.

Clotting Factors: Number, Name and Description
Factor Number Name Description
I Fibrinogen Plasma protein produced by the liver. Fibrinogen can form bridges between activated platelets, but is more known for its major function as a precursor to fibrin.
II Prothrombin Plasma protein produced by the liver. It is activated by a complex of factor X and V to become thrombin. Thrombin is important because it converts fibrinogen to fibrin.
III Tissue Thromboplastin (Tissue Factor) This is an integral membrane protein produced by cells outside of the vascular conduits of the circulatory system. It is necessary for the first step of the extrinsic pathway. This protein is a receptor for a plasma protein called factor VII. When exposed to factor VII, a large enzyme complex is formed that can activate factor X (the common pathway).
IV Calcium ions Required as a cofactor for many of the enzymatic reactions that take place in the clotting cascade.
V Proaccelerin (Labile Factor) A plasma protein produced by the liver. Factor V is a cofactor that can associate with Factor X and accelerate the conversion of Prothrombin to Thrombin.
VI   Now known to be just activated Factor V, so a distinct factor VI is no longer considered to exist.
VII Serum Prothrombin Conversion Accelerator (stable factor, proconvertin) Plasma protein synthesized in the liver. Important in the extrinsic pathway as it helps form an enzyme complex with tissue thromboplastin.
VIII Antihemophilic factor (antihemophilic globulin) A plasma protein that is synthesized in the liver as well. It is a cofactor with factor IX to activate factor X of the common pathway. Factor VIII is an important component of the intrinsic pathway.
IX Plasma Thromboplastin Component (Christmas Factor) Another plasma protein synthesized by the liver. It is important for the activation of factor X. This factor is another component of the intrinsic pathway.
X Stuart Factor (Stuart - Prower factor) Synthesized in the liver and is found as a plasma protein that when activated can from a complex with Factor V, phospholipids and calcium. This complex is the first step of the common pathway and has the job of activating prothrombin to thrombin.
XI Plasma Thromboplastin Antecedent Another plasma protein synthesized in the liver. It is an important intermediary in the intrinsic pathway as it is responsible for activating factor IX.
XII Hageman Factor Yet another plasma protein coming from the liver that travels in the blood. It is activated by contact with polyanions (molecules with a lot of negative charges). If a blood vessel has damage to the endothelium, the collagen comes into contact with factor XII. The collagen proteins have multiple negative charges throughout the macromolecule and this is enough to activate factor XII. Factor XII activation is the first step of the intrinsic pathway.
XIII Fibrin Stabilizing Factor A plasma protein synthesized in the bone marrow and possibly liver. This protein, once activated, can covalently bond with fibrin in a way that "cross links" are formed. This makes the fibrin network insoluble and more stable.

Thrombus vs Embolus

A blood clot which will include platelets and fibrin is also called a thrombus if it is anchored to the vessel wall where it was created. If this thrombus breaks away from the vessel wall and begins to circulate in the vascular system, it is called an Embolus or an Embolism. An embolus can be very dangerous because it may get stuck in a small blood vessel and block blood flow from reaching cells further downstream. Cells die without constant blood flow reaching them. If an Embolus blocks enough blood flow to cells in the heart or the brain, it can quickly become lethal.

Clot Retraction and Fibrinolysis

Keep in mind that blood clots form upon and in conjunction with a preexisting platelet plug. Upon clot formation, a process known as clot retraction occurs. During clot retraction, actin and myosin contained within platelets of the platelet plug begin to contract. As these proteins contract, the web of platelets connected by molecules of fibrinogen begins to retract and condense. This, in turn, causes the connected fibrin blood clot to retract and condense as well. Consequently, clot retraction decreases the size of the cut or gash by drawing the damaged ends of the blood vessel toward one another. Fibroblasts and epithelial cells proliferate in and around the clot. This serves to help repair the damaged vessel.

Within several days of clot formation, an enzyme known as plasmin completely degrades fibrin, thus dissolving the clot through a process known as fibrinolysis. Plasmin is the active form of an inactive plasma protein known as plasminogen. Plasminogen is synthesized and released by the liver and is converted to plasmin by a number of different molecules, one of which is called tissue plasminogen activator (tPA). Endothelial cells produce tPA. In the presence of fibrin, tPA greatly accelerates its enzymatic function to convert plasminogen to plasmin, thus initiating the process of clot dissolution. It is interesting to note that by activating tPA, fibrin initiates its own degradation. tPA can be given to patients who are experiencing heart attacks or strokes caused by an embolism (floating clot). However, the treatment seems to be most effective if it is administered within 90 minutes of onset of symptoms.

Plasmin Activation
Modified from; Author: Jfdwolff; This file is licensed under the Creative Commons Attribution-Share Alike 3.0 Unported license.

Blood Clot Regulation

If the mechanisms governing platelet plug formation and coagulation were allowed to proceed unchecked, undesirable clots would form ultimately resulting in death. The reason that undesirable clots would spontaneously arise is because small amounts of thrombin are always being formed accidentally. Also, there are constant rough areas and small breaks on blood vessels. If clots formed in an unchecked manner, then a clotting cascade could be initiated that would end up in positive feedback and the clotting would grow and develop through the entire vascular system of a person. Just as there are built-in forces the prevent platelet activation that we discussed early in this section, there are also forces that help prevent blood clot formation. Blood plasma contains naturally occurring molecules known as anticoagulants which restrict clot formation to locations of damaged vessels.

A plasma protein called antithrombin works in conjunction with heparin to deactivate thrombin. Heparin is produced on the surface of endothelial cells and released from granules in mast cells. Another anticoagulant produced by endothelial cells is a lipid known as Prostacyclin which opposes local concentration of clotting factors by acting as a vasodilator and also targets platelet plug formation by inhibiting platelet activation.

Vitamin K plays an important role in coagulation, as the production of various clotting factors within the liver depends upon this cofactor. A common prescription anticoagulant known as Warfarin (Coumadin) manipulates blood clotting efficiency by inhibiting the activity of an enzyme that participates in recycling vitamin K. The consumption of leafy green vegetables containing high levels of vitamin K interferes with the expected outcomes of this drug.

There are two blood tests used clinically to assess the coagulation of blood, the partial thromboplastin time (PTT) and prothrombin time (PT). The tests are used extensively to help monitor the status of blood clotting in patients being treated with “blood thinners” like heparin inhibition of several intrinsic pathway factors or warfarin (blocks vitamin K actions). The PTT test is used to determine the speed at which blood clots by measuring the effectiveness of clotting factors: VIII, X,  XI, and XII. Thus, the PTT test determines if the intrinsic and common pathways are working correctly (heparin treatment). In contrast, the PT test determines the speed of clotting by measuring the effectiveness of factor VII (dependent upon vitamin K) found in the extrinsic pathway (warfarin treatment).

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